PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G014400.1
Common NamePHAVU_005G014400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 290aa    MW: 32407.9 Da    PI: 8.0356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G014400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012110132123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C k Fs++  L  H++ H
  Phvul.005G014400.1 110 FSCNFCQKEFSSSQALGGHQNAH 132
                         89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.83E-7107138No hitNo description
Gene3DG3DSA:3.30.160.602.5E-5108136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.78110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASSHNLEDY SSEVSSTSQD ICRKEEGKKV EVTPMKDKSI KFEEGHVSNP KTHMVLDFVK  60
FSNDQSICGS KVELDFFNPM NVGGSSSRTN HNQGRDENNK EEKSSEAKTF SCNFCQKEFS  120
SSQALGGHQN AHKQERALTK RRQGIDGGGF RNPHILYYPY PTHSLYGSYN RTLGVRMDSM  180
IHKPLYPSSS LGLRFGQAFS RQGMINSSSL GLQKNTGIRI MESDTTLRTQ SDHGTSRHNI  240
PFLAESSTNV TNKSNLTSLK IENNDDHSKK EEISYLTSSF DEIDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148789.10.0hypothetical protein PHAVU_005G014400g
TrEMBLV7BUS20.0V7BUS2_PHAVU; Uncharacterized protein
STRINGGLYMA04G15560.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-20C2H2 family protein